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Introduction
1. CARS
2. Psych/soc
3. Bio/biochem
3.1 Structure and function of proteins and their constituent amino acids
3.2 Transmission of genetic information from the gene to the protein
3.3 Heredity and genetic diversity
3.4 Principles of bioenergetics and fuel molecule metabolism
3.5 Assemblies of molecules, cells, groups of cells
3.6 Structure and physiology of prokaryotes and viruses
3.7 Processes of cell division, differentiation, and specialization
3.8 Structure and functions of nervous and endocrine systems
3.9 Structure and functions of main organ systems
3.9.1 Circulatory system
3.9.2 Digestive system
3.9.3 Excretory and reproductive systems
3.9.4 Muscular and skeletal systems
3.9.5 Respiratory system
3.9.6 Integumentary (skin, hair, nails) system
3.9.7 Lymphatic and immune systems
4. Chem/phys
Wrapping up
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3.9.2 Digestive system
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3. Bio/biochem
3.9. Structure and functions of main organ systems

Digestive system

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Structure and function of the stomach in digestion
Structure and function of the stomach in digestion

Ingestion

The process of ingestion begins in the mouth. Saliva dissolves food and contains:

  • Mucin for lubrication
  • Amylase to begin breaking down polysaccharides
  • Antimicrobial components such as antibodies and lysozyme

As you swallow, the epiglottis closes off the airway to help prevent choking. The pharynx then directs the food bolus into the esophagus, a muscular tube that moves food toward the stomach by peristalsis (rhythmic muscle contractions).

Once food reaches the stomach, digestion continues through both mechanical mixing and chemical breakdown. The stomach’s acidic environment is produced by parietal cells, which secrete hydrochloric acid. The low pH activates pepsin, a protease that breaks down proteins. At the same time, goblet cells secrete a protective mucus layer that helps prevent the stomach lining from being digested.

The stomach is an elastic, banana-shaped organ that can stretch considerably. It’s sealed by the cardiac sphincter at the top (where the esophagus enters) and the pyloric sphincter at the bottom (where contents exit into the small intestine).

The liver supports digestion and metabolism in several ways. It synthesizes bile from cholesterol. Bile is stored in the gall bladder and released to emulsify fats into smaller droplets called micelles, which increases surface area for lipase to act. The liver also makes and stores glycogen, carries out gluconeogenesis, and performs detoxification (including ammonia removal). In addition, it stores certain vitamins and iron.

Finally, bile may be held in the gall bladder until it’s needed. When released, it enters the duodenum to assist fat digestion.

Major digestive enzymes

Enzyme Produced in Site of release pH level
Carbohydrate digestion:
Salivary amylase Salivary glands Mouth Neutral
Pancreatic amylase Pancreas Small intestine Basic
Maltase Small intestine Small intestine Basic
Protein digestion:
Pepsin Gastric glands Stomach Acidic
Trypsin Pancreas Small intestine Basic
Peptidases Small intestine Small intestine Basic
Nucleic acid digestion:
Nuclease Pancreas Small intestine Basic
Nucleosidases Pancreas Small intestine Basic
Fat digestion:
Lipase Pancreas Small intestine Basic

Table adapted from Wikimedia

Pancreas

The pancreas is a tadpole-shaped gland that produces a wide range of digestive enzymes and bicarbonate. Its enzymes include Amylase (starch digestion), various Proteases (protein digestion), Lipase (fat digestion), and Ribonuclease (nucleic acid digestion).

The pancreas also synthesizes HCO3−​, which neutralizes acidic chyme arriving from the stomach. This helps create an optimal pH for digestive enzymes in the small intestine. Because this secretion is exocrine, pancreatic enzymes and bicarbonate travel through a duct into the duodenum, the first part of the small intestine.

Small intestine

The small intestine is the main site of digestion and absorption. It has three sections: the duodenum, jejunum, and ileum. Its inner lining contains folds, villi, and microvilli, which greatly increase surface area and improve nutrient uptake.

Inside each villus:

  • Blood capillaries absorb most nutrients.
  • Lacteals (specialized lymphatic capillaries) absorb digested fats.

Enterocytes (intestinal absorptive cells) move molecules into circulation using active transport or facilitated diffusion, depending on concentration gradients.

Most digestive enzymes come from the pancreas, but the small intestine also produces additional enzymes (for example, certain proteases and amylases). Together, pancreatic secretions, intestinal enzymes, and bicarbonate’s neutralizing effect allow nutrients to be efficiently broken down and absorbed.

Large intestine

The large intestine is divided into several regions:

  • The cecum, which is a blind pouch containing the appendix
  • The ascending colon, transverse colon, descending colon, and sigmoid colon
  • The rectum, which stores feces.

Unlike the small intestine, the large intestine has no folds or villi. Its primary function is to absorb any remaining water that wasn’t absorbed in the small intestine.

Within the large intestine, bacterial flora ferment undigested nutrients (producing gas) and synthesize vitamin K, which is necessary for blood clotting. The rectum connects to the outside through the anal sphincter, which opens during defecation to release waste.

Muscular control

Muscular control in the digestive tract depends on valves (sphincters) and coordinated movement. The cardiac sphincter (gastroesophageal sphincter) at the junction of the esophagus and stomach helps prevent food from moving backward. The pyloric sphincter at the stomach’s exit controls the flow of stomach contents into the small intestine.

Peristalsis - rhythmic contractions of smooth muscle - moves food through each segment of the gastrointestinal tract so digestion and absorption can proceed.

Peristalsis
Peristalsis

Endocrine control

The endocrine system regulates digestion by releasing hormones that act on specific target tissues in the gastrointestinal tract:

  • gastrin is secreted by G cells in the stomach and stimulates parietal cells to produce gastric acid, supporting digestion.
  • When acidic chyme enters the small intestine, secretin is released from duodenal S cells. Secretin prompts the pancreas and liver to secrete bicarbonate and bile, respectively.
  • cholecystokinin (CCK) is produced by I cells in the small intestine. It causes the gallbladder to contract and stimulates the pancreas to release digestive enzymes.
  • Hormones such as glucagon-like peptide-1 (GLP-1) and peptide YY (PYY) help regulate satiety and slow gastric emptying, fine-tuning the overall digestive process.

Nervous control

The enteric nervous system (ENS) provides autonomous control over digestion by coordinating local reflexes. This network of neurons, embedded in the walls of the gastrointestinal tract, regulates motility, secretion, and blood flow.

Although the ENS can function independently, it communicates with the central nervous system through the vagus nerve, allowing digestive activity to adjust in response to food intake and other stimuli.

Ingestion

  • Begins in mouth: saliva (mucin, amylase, antimicrobials)
  • Food moves via peristalsis from pharynx → esophagus → stomach
  • Stomach: mechanical mixing, acid (parietal cells), pepsin (protein digestion), mucus protection (goblet cells)
  • Sphincters: cardiac (entry), pyloric (exit)
  • Liver: bile synthesis, glycogen storage, gluconeogenesis, detoxification, vitamin/iron storage
  • Gall bladder: stores/releases bile for fat emulsification

Major digestive enzymes

  • Carbohydrate: salivary amylase (mouth, neutral), pancreatic amylase (SI, basic), maltase (SI, basic)
  • Protein: pepsin (stomach, acidic), trypsin (SI, basic), peptidases (SI, basic)
  • Nucleic acid: nuclease, nucleosidases (SI, basic)
  • Fat: lipase (SI, basic)

Pancreas

  • Produces digestive enzymes: amylase, proteases, lipase, ribonuclease
  • Secretes bicarbonate (HCO3−​) to neutralize stomach acid
  • Exocrine secretion via duct into duodenum

Small intestine

  • Main site for digestion and absorption
  • Sections: duodenum, jejunum, ileum
  • Surface area increased by folds, villi, microvilli
  • Villi: blood capillaries (nutrients), lacteals (fats)
  • Enterocytes: active transport/facilitated diffusion
  • Receives enzymes from pancreas and produces some itself

Large intestine

  • Regions: cecum (appendix), ascending/transverse/descending/sigmoid colon, rectum
  • No folds or villi; absorbs remaining water
  • Bacterial flora: ferment undigested nutrients, synthesize vitamin K
  • Rectum stores feces; anal sphincter controls defecation

Muscular control

  • Sphincters: cardiac (esophagus-stomach), pyloric (stomach-SI)
  • Peristalsis: rhythmic smooth muscle contractions for food movement

Endocrine control

  • Gastrin: stimulates gastric acid (parietal cells)
  • Secretin: triggers pancreas (bicarbonate) and liver (bile) secretion
  • Cholecystokinin (CCK): gallbladder contraction, pancreatic enzyme release
  • GLP-1, PYY: regulate satiety, slow gastric emptying

Nervous control

  • Enteric nervous system (ENS): autonomous control of motility, secretion, blood flow
  • Communicates with CNS via vagus nerve for integrated digestive responses

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Digestive system

Ingestion

The process of ingestion begins in the mouth. Saliva dissolves food and contains:

  • Mucin for lubrication
  • Amylase to begin breaking down polysaccharides
  • Antimicrobial components such as antibodies and lysozyme

As you swallow, the epiglottis closes off the airway to help prevent choking. The pharynx then directs the food bolus into the esophagus, a muscular tube that moves food toward the stomach by peristalsis (rhythmic muscle contractions).

Once food reaches the stomach, digestion continues through both mechanical mixing and chemical breakdown. The stomach’s acidic environment is produced by parietal cells, which secrete hydrochloric acid. The low pH activates pepsin, a protease that breaks down proteins. At the same time, goblet cells secrete a protective mucus layer that helps prevent the stomach lining from being digested.

The stomach is an elastic, banana-shaped organ that can stretch considerably. It’s sealed by the cardiac sphincter at the top (where the esophagus enters) and the pyloric sphincter at the bottom (where contents exit into the small intestine).

The liver supports digestion and metabolism in several ways. It synthesizes bile from cholesterol. Bile is stored in the gall bladder and released to emulsify fats into smaller droplets called micelles, which increases surface area for lipase to act. The liver also makes and stores glycogen, carries out gluconeogenesis, and performs detoxification (including ammonia removal). In addition, it stores certain vitamins and iron.

Finally, bile may be held in the gall bladder until it’s needed. When released, it enters the duodenum to assist fat digestion.

Major digestive enzymes

Enzyme Produced in Site of release pH level
Carbohydrate digestion:
Salivary amylase Salivary glands Mouth Neutral
Pancreatic amylase Pancreas Small intestine Basic
Maltase Small intestine Small intestine Basic
Protein digestion:
Pepsin Gastric glands Stomach Acidic
Trypsin Pancreas Small intestine Basic
Peptidases Small intestine Small intestine Basic
Nucleic acid digestion:
Nuclease Pancreas Small intestine Basic
Nucleosidases Pancreas Small intestine Basic
Fat digestion:
Lipase Pancreas Small intestine Basic

Table adapted from Wikimedia

Pancreas

The pancreas is a tadpole-shaped gland that produces a wide range of digestive enzymes and bicarbonate. Its enzymes include Amylase (starch digestion), various Proteases (protein digestion), Lipase (fat digestion), and Ribonuclease (nucleic acid digestion).

The pancreas also synthesizes HCO3−​, which neutralizes acidic chyme arriving from the stomach. This helps create an optimal pH for digestive enzymes in the small intestine. Because this secretion is exocrine, pancreatic enzymes and bicarbonate travel through a duct into the duodenum, the first part of the small intestine.

Small intestine

The small intestine is the main site of digestion and absorption. It has three sections: the duodenum, jejunum, and ileum. Its inner lining contains folds, villi, and microvilli, which greatly increase surface area and improve nutrient uptake.

Inside each villus:

  • Blood capillaries absorb most nutrients.
  • Lacteals (specialized lymphatic capillaries) absorb digested fats.

Enterocytes (intestinal absorptive cells) move molecules into circulation using active transport or facilitated diffusion, depending on concentration gradients.

Most digestive enzymes come from the pancreas, but the small intestine also produces additional enzymes (for example, certain proteases and amylases). Together, pancreatic secretions, intestinal enzymes, and bicarbonate’s neutralizing effect allow nutrients to be efficiently broken down and absorbed.

Large intestine

The large intestine is divided into several regions:

  • The cecum, which is a blind pouch containing the appendix
  • The ascending colon, transverse colon, descending colon, and sigmoid colon
  • The rectum, which stores feces.

Unlike the small intestine, the large intestine has no folds or villi. Its primary function is to absorb any remaining water that wasn’t absorbed in the small intestine.

Within the large intestine, bacterial flora ferment undigested nutrients (producing gas) and synthesize vitamin K, which is necessary for blood clotting. The rectum connects to the outside through the anal sphincter, which opens during defecation to release waste.

Muscular control

Muscular control in the digestive tract depends on valves (sphincters) and coordinated movement. The cardiac sphincter (gastroesophageal sphincter) at the junction of the esophagus and stomach helps prevent food from moving backward. The pyloric sphincter at the stomach’s exit controls the flow of stomach contents into the small intestine.

Peristalsis - rhythmic contractions of smooth muscle - moves food through each segment of the gastrointestinal tract so digestion and absorption can proceed.

Endocrine control

The endocrine system regulates digestion by releasing hormones that act on specific target tissues in the gastrointestinal tract:

  • gastrin is secreted by G cells in the stomach and stimulates parietal cells to produce gastric acid, supporting digestion.
  • When acidic chyme enters the small intestine, secretin is released from duodenal S cells. Secretin prompts the pancreas and liver to secrete bicarbonate and bile, respectively.
  • cholecystokinin (CCK) is produced by I cells in the small intestine. It causes the gallbladder to contract and stimulates the pancreas to release digestive enzymes.
  • Hormones such as glucagon-like peptide-1 (GLP-1) and peptide YY (PYY) help regulate satiety and slow gastric emptying, fine-tuning the overall digestive process.

Nervous control

The enteric nervous system (ENS) provides autonomous control over digestion by coordinating local reflexes. This network of neurons, embedded in the walls of the gastrointestinal tract, regulates motility, secretion, and blood flow.

Although the ENS can function independently, it communicates with the central nervous system through the vagus nerve, allowing digestive activity to adjust in response to food intake and other stimuli.

Key points

Ingestion

  • Begins in mouth: saliva (mucin, amylase, antimicrobials)
  • Food moves via peristalsis from pharynx → esophagus → stomach
  • Stomach: mechanical mixing, acid (parietal cells), pepsin (protein digestion), mucus protection (goblet cells)
  • Sphincters: cardiac (entry), pyloric (exit)
  • Liver: bile synthesis, glycogen storage, gluconeogenesis, detoxification, vitamin/iron storage
  • Gall bladder: stores/releases bile for fat emulsification

Major digestive enzymes

  • Carbohydrate: salivary amylase (mouth, neutral), pancreatic amylase (SI, basic), maltase (SI, basic)
  • Protein: pepsin (stomach, acidic), trypsin (SI, basic), peptidases (SI, basic)
  • Nucleic acid: nuclease, nucleosidases (SI, basic)
  • Fat: lipase (SI, basic)

Pancreas

  • Produces digestive enzymes: amylase, proteases, lipase, ribonuclease
  • Secretes bicarbonate (HCO3−​) to neutralize stomach acid
  • Exocrine secretion via duct into duodenum

Small intestine

  • Main site for digestion and absorption
  • Sections: duodenum, jejunum, ileum
  • Surface area increased by folds, villi, microvilli
  • Villi: blood capillaries (nutrients), lacteals (fats)
  • Enterocytes: active transport/facilitated diffusion
  • Receives enzymes from pancreas and produces some itself

Large intestine

  • Regions: cecum (appendix), ascending/transverse/descending/sigmoid colon, rectum
  • No folds or villi; absorbs remaining water
  • Bacterial flora: ferment undigested nutrients, synthesize vitamin K
  • Rectum stores feces; anal sphincter controls defecation

Muscular control

  • Sphincters: cardiac (esophagus-stomach), pyloric (stomach-SI)
  • Peristalsis: rhythmic smooth muscle contractions for food movement

Endocrine control

  • Gastrin: stimulates gastric acid (parietal cells)
  • Secretin: triggers pancreas (bicarbonate) and liver (bile) secretion
  • Cholecystokinin (CCK): gallbladder contraction, pancreatic enzyme release
  • GLP-1, PYY: regulate satiety, slow gastric emptying

Nervous control

  • Enteric nervous system (ENS): autonomous control of motility, secretion, blood flow
  • Communicates with CNS via vagus nerve for integrated digestive responses