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Introduction
1. CARS
2. Psych/soc
3. Bio/biochem
3.1 Structure and function of proteins and their constituent amino acids
3.2 Transmission of genetic information from the gene to the protein
3.3 Heredity and genetic diversity
3.4 Principles of bioenergetics and fuel molecule metabolism
3.4.1 Bioenergetics, free energy, ATP and redox in biology
3.4.2 Carbohydrates
3.4.3 Glycolysis, gluconeogenesis, metabolic regulation
3.4.4 Citric acid cycle, ETP, OP, hormonal regulation
3.5 Assemblies of molecules, cells, groups of cells
3.6 Structure and physiology of prokaryotes and viruses
3.7 Processes of cell division, differentiation, and specialization
3.8 Structure and functions of nervous and endocrine systems
3.9 Structure and functions of main organ systems
4. Chem/phys
Wrapping up
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3.4.2 Carbohydrates
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3. Bio/biochem
3.4. Principles of bioenergetics and fuel molecule metabolism

Carbohydrates

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Carbohydrates are essential biomolecules that act as energy sources and structural components in living organisms.

They’re classified by how many sugar units they contain:

  • Monosaccharides are single sugar molecules.
  • Disaccharides consist of two linked sugars.
  • Polysaccharides are long chains of sugars.
Monosaccharide types and structures showing aldoses and ketoses
Monosaccharide types and structures showing aldoses and ketoses

Glucose, with the chemical formula C6​H12​O6​, is a major energy source for humans. Other important monosaccharides include galactose (a component of lactose, or milk sugar) and fructose (found in sucrose, the sugar in many fruits and in table sugar).

Even though glucose, galactose, and fructose share the same molecular formula (C6​H12​O6​), they’re structural isomers. That means they differ in how their atoms are connected and arranged. Their different chemical behaviors come from differences in the placement of functional groups around their asymmetric carbons. Importantly, each of these sugars has more than one chiral center.

Hexose isomers glucose, galactose, and fructose with structural differences
Hexose isomers glucose, galactose, and fructose with structural differences

Nomenclature

  • Carbohydrates can be named using both systematic IUPAC nomenclature and common names, and their classification points to their diverse functions in biology.

Carbohydrate prefixes:

  • Deoxy = “without oxygen” has an −H in place of an −OH at a certain position.
  • D/L = absolute configuration = the prefixes D and L indicate the absolute configuration of a sugar. This designation is based on the stereochemistry (3D arrangement of atoms) of the chiral carbon farthest from the carbonyl group. If the hydroxyl group on this carbon is oriented like it is in D-glyceraldehyde, the sugar is designated D; the opposite configuration is L.
  • α/β = anomeric configuration= arises when a sugar forms a cyclic structure. During cyclization, the carbonyl group reacts with a hydroxyl group to create a new chiral center called the anomeric carbon.
    • The α form has the hydroxyl group on the anomeric carbon positioned opposite to the CH₂OH group at the far end of the ring.
    • The β form has the hydroxyl group on the same side as the CH2​OH group.
    • These configuration differences matter because they change a sugar’s physical and chemical properties and can affect biological interactions.

Carbohydrate suffix: all sugars end in -ose.

Ring (cyclic) forms of monosaccharides

  • Many hexoses, such as glucose, exist mainly in cyclic forms rather than as open-chain molecules, especially in aqueous solution. Ring formation happens through an intramolecular reaction that produces either a hemiacetal (an alcohol and ether attached to the same carbon) or a hemiketal (formed when an alcohol adds to a ketone). These cyclic sugars can adopt characteristic conformations (such as chair or boat forms), which influence stability and reactivity.

Within cyclic forms, small stereochemical differences produce epimers and anomers.

  • Epimers differ in configuration at just one specific carbon atom.
  • Anomers are a special type of epimer that differ at the new chiral center created during cyclization (the anomeric carbon). These are labeled alpha (α) or beta (β) based on the orientation of the substituent relative to the ring.
Monosaccharide ring and linear forms including alpha and beta glucose
Monosaccharide ring and linear forms including alpha and beta glucose

Disaccharides and polysaccharides
Glycosidic bonds join monosaccharides into larger carbohydrate molecules.

  • Sucrose (table sugar) is a disaccharide made of α-glucose and β-fructose. They’re connected through their anomeric hydroxyl groups, forming acetal bonds.
  • Lactose forms when β-galactose links to glucose (which can be either α or β) through a 1-4 glycosidic bond.
Disaccharide formation showing glycosidic bond in sucrose between glucose and fructose
Disaccharide formation showing glycosidic bond in sucrose between glucose and fructose
  • Maltose (malt sugar) is another disaccharide. It forms through a Dehydration reaction between two glucose molecules.
Common disaccharides maltose and lactose
Common disaccharides maltose and lactose

Starch is a polymer (a polysaccharide made up of monosaccharides) composed of glucose units connected mainly by α 1-4 glycosidic bonds. It serves as the main energy storage molecule in plants.

Glycogen is structurally similar to starch but includes additional α 1-6 linkages that create branching. This branching makes glycogen an efficient energy reserve in animals, and it’s stored primarily in the liver.

Reactions of monosaccharides

  • Acetal formation occurs when an extra hydroxyl group attacks a carbonyl carbon. This reaction can link monosaccharides into polysaccharides if the attacking -OH comes from another sugar unit.
  • Mutarotation is the equilibrium between the α and β forms (anomers) of a sugar.
  • Under strong oxidation conditions, the aldehyde group and terminal hydroxyls are converted into carboxylic acids, while other hydroxyl groups are transformed into ketones. In extreme cases, such as during cellular respiration, all carbon atoms can be fully oxidized to CO2​.
  • In contrast, mild oxidation is more selective. For example, Tollens reagent oxidizes the aldehyde group of aldoses to a carboxylic acid, and nitric acid oxidizes both the aldehyde and the terminal hydroxyl groups to carboxylic acids while leaving the other hydroxyl groups intact.
  • Reduction reactions convert monosaccharides into polyalcohols by turning carbonyl groups into additional hydroxyl groups.

Hydrolysis of the glycoside linkage

  • Another critical reaction in carbohydrate chemistry is the hydrolysis of the glycosidic linkage.
  • Hydrolysis, often catalyzed by glycosidase enzymes, breaks these bonds by adding a water molecule, releasing the constituent sugar units.

Carbohydrate classification

  • Monosaccharides: single sugar units
  • Disaccharides: two linked sugars
  • Polysaccharides: long chains of sugars

Monosaccharide structure and isomerism

  • Glucose, galactose, fructose: all C6​H12​O6​, but structural isomers
  • Differ in functional group placement and arrangement around asymmetric (chiral) carbons
  • Multiple chiral centers per molecule

Nomenclature and stereochemistry

  • Prefixes:
    • Deoxy: −H replaces −OH at a position
    • D/L: absolute configuration at chiral carbon farthest from carbonyl group
    • $ b/\beta$: anomeric configuration in cyclic forms (orientation of anomeric −OH vs CH2​OH)
  • Suffix: all sugars end in -ose

Cyclic forms and stereoisomers

  • Hexoses (e.g., glucose) mainly exist as cyclic hemiacetals/hemiketals in solution
  • Epimers: differ at one specific carbon atom
  • Anomers: epimers at the anomeric carbon (created during cyclization), labeled α or β

Disaccharides and polysaccharides

  • Glycosidic bonds join monosaccharides
  • Sucrose: α-glucose + β-fructose (anomeric linkage)
  • Lactose: β-galactose + glucose (1-4 glycosidic bond)
  • Maltose: two glucose units (dehydration reaction)
  • Starch: plant energy storage, α 1-4 glycosidic bonds
  • Glycogen: animal energy storage, α 1-4 and α 1-6 (branching), stored in liver

Reactions of monosaccharides

  • Acetal formation: links sugars via new glycosidic bonds
  • Mutarotation: equilibrium between α and β anomers
  • Oxidation:
    • Strong: converts aldehyde and terminal −OH to carboxylic acids; full oxidation to CO2​
    • Mild: selective (e.g., Tollens reagent, nitric acid)
  • Reduction: converts carbonyls to additional −OH (forms polyalcohols)

Hydrolysis of glycosidic linkages

  • Glycosidase enzymes catalyze hydrolysis, adding water to break glycosidic bonds
  • Releases monosaccharide units

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Carbohydrates

Carbohydrates are essential biomolecules that act as energy sources and structural components in living organisms.

They’re classified by how many sugar units they contain:

  • Monosaccharides are single sugar molecules.
  • Disaccharides consist of two linked sugars.
  • Polysaccharides are long chains of sugars.

Glucose, with the chemical formula C6​H12​O6​, is a major energy source for humans. Other important monosaccharides include galactose (a component of lactose, or milk sugar) and fructose (found in sucrose, the sugar in many fruits and in table sugar).

Even though glucose, galactose, and fructose share the same molecular formula (C6​H12​O6​), they’re structural isomers. That means they differ in how their atoms are connected and arranged. Their different chemical behaviors come from differences in the placement of functional groups around their asymmetric carbons. Importantly, each of these sugars has more than one chiral center.

Nomenclature

  • Carbohydrates can be named using both systematic IUPAC nomenclature and common names, and their classification points to their diverse functions in biology.

Carbohydrate prefixes:

  • Deoxy = “without oxygen” has an −H in place of an −OH at a certain position.
  • D/L = absolute configuration = the prefixes D and L indicate the absolute configuration of a sugar. This designation is based on the stereochemistry (3D arrangement of atoms) of the chiral carbon farthest from the carbonyl group. If the hydroxyl group on this carbon is oriented like it is in D-glyceraldehyde, the sugar is designated D; the opposite configuration is L.
  • α/β = anomeric configuration= arises when a sugar forms a cyclic structure. During cyclization, the carbonyl group reacts with a hydroxyl group to create a new chiral center called the anomeric carbon.
    • The α form has the hydroxyl group on the anomeric carbon positioned opposite to the CH₂OH group at the far end of the ring.
    • The β form has the hydroxyl group on the same side as the CH2​OH group.
    • These configuration differences matter because they change a sugar’s physical and chemical properties and can affect biological interactions.

Carbohydrate suffix: all sugars end in -ose.

Ring (cyclic) forms of monosaccharides

  • Many hexoses, such as glucose, exist mainly in cyclic forms rather than as open-chain molecules, especially in aqueous solution. Ring formation happens through an intramolecular reaction that produces either a hemiacetal (an alcohol and ether attached to the same carbon) or a hemiketal (formed when an alcohol adds to a ketone). These cyclic sugars can adopt characteristic conformations (such as chair or boat forms), which influence stability and reactivity.

Within cyclic forms, small stereochemical differences produce epimers and anomers.

  • Epimers differ in configuration at just one specific carbon atom.
  • Anomers are a special type of epimer that differ at the new chiral center created during cyclization (the anomeric carbon). These are labeled alpha (α) or beta (β) based on the orientation of the substituent relative to the ring.

Disaccharides and polysaccharides
Glycosidic bonds join monosaccharides into larger carbohydrate molecules.

  • Sucrose (table sugar) is a disaccharide made of α-glucose and β-fructose. They’re connected through their anomeric hydroxyl groups, forming acetal bonds.
  • Lactose forms when β-galactose links to glucose (which can be either α or β) through a 1-4 glycosidic bond.
  • Maltose (malt sugar) is another disaccharide. It forms through a Dehydration reaction between two glucose molecules.

Starch is a polymer (a polysaccharide made up of monosaccharides) composed of glucose units connected mainly by α 1-4 glycosidic bonds. It serves as the main energy storage molecule in plants.

Glycogen is structurally similar to starch but includes additional α 1-6 linkages that create branching. This branching makes glycogen an efficient energy reserve in animals, and it’s stored primarily in the liver.

Reactions of monosaccharides

  • Acetal formation occurs when an extra hydroxyl group attacks a carbonyl carbon. This reaction can link monosaccharides into polysaccharides if the attacking -OH comes from another sugar unit.
  • Mutarotation is the equilibrium between the α and β forms (anomers) of a sugar.
  • Under strong oxidation conditions, the aldehyde group and terminal hydroxyls are converted into carboxylic acids, while other hydroxyl groups are transformed into ketones. In extreme cases, such as during cellular respiration, all carbon atoms can be fully oxidized to CO2​.
  • In contrast, mild oxidation is more selective. For example, Tollens reagent oxidizes the aldehyde group of aldoses to a carboxylic acid, and nitric acid oxidizes both the aldehyde and the terminal hydroxyl groups to carboxylic acids while leaving the other hydroxyl groups intact.
  • Reduction reactions convert monosaccharides into polyalcohols by turning carbonyl groups into additional hydroxyl groups.

Hydrolysis of the glycoside linkage

  • Another critical reaction in carbohydrate chemistry is the hydrolysis of the glycosidic linkage.
  • Hydrolysis, often catalyzed by glycosidase enzymes, breaks these bonds by adding a water molecule, releasing the constituent sugar units.
Key points

Carbohydrate classification

  • Monosaccharides: single sugar units
  • Disaccharides: two linked sugars
  • Polysaccharides: long chains of sugars

Monosaccharide structure and isomerism

  • Glucose, galactose, fructose: all C6​H12​O6​, but structural isomers
  • Differ in functional group placement and arrangement around asymmetric (chiral) carbons
  • Multiple chiral centers per molecule

Nomenclature and stereochemistry

  • Prefixes:
    • Deoxy: −H replaces −OH at a position
    • D/L: absolute configuration at chiral carbon farthest from carbonyl group
    • $ b/\beta$: anomeric configuration in cyclic forms (orientation of anomeric −OH vs CH2​OH)
  • Suffix: all sugars end in -ose

Cyclic forms and stereoisomers

  • Hexoses (e.g., glucose) mainly exist as cyclic hemiacetals/hemiketals in solution
  • Epimers: differ at one specific carbon atom
  • Anomers: epimers at the anomeric carbon (created during cyclization), labeled α or β

Disaccharides and polysaccharides

  • Glycosidic bonds join monosaccharides
  • Sucrose: α-glucose + β-fructose (anomeric linkage)
  • Lactose: β-galactose + glucose (1-4 glycosidic bond)
  • Maltose: two glucose units (dehydration reaction)
  • Starch: plant energy storage, α 1-4 glycosidic bonds
  • Glycogen: animal energy storage, α 1-4 and α 1-6 (branching), stored in liver

Reactions of monosaccharides

  • Acetal formation: links sugars via new glycosidic bonds
  • Mutarotation: equilibrium between α and β anomers
  • Oxidation:
    • Strong: converts aldehyde and terminal −OH to carboxylic acids; full oxidation to CO2​
    • Mild: selective (e.g., Tollens reagent, nitric acid)
  • Reduction: converts carbonyls to additional −OH (forms polyalcohols)

Hydrolysis of glycosidic linkages

  • Glycosidase enzymes catalyze hydrolysis, adding water to break glycosidic bonds
  • Releases monosaccharide units