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1. Medical assistant
2. Electronic records
3. Medical terminology and anatomy
4. The fundamentals of infection control
5. Introduction to vital signs
6. The patient interview and history
7. The physical examination
8. Appointment scheduling
9. Insurance billing
10. Diagnostic coding and the ICD-10-CM System
11. Procedural coding
12. Medical billing and reimbursement essentials
13. Assisting with medical specialties
14. Assisting with the musculoskeletal system
15. Assisting with the cardiovascular system
16. Assisting with the respiratory system
17. Assisting with the nervous system
18. Anatomy and physiology of the urinary system
19. Assisting in obstetrics and gynecology
20. Assisting in endocrinology
21. Assisting in ophthalmology & otolaryngology
22. Assisting in gastroenterology
23. Assisting in the immune & lymphatic systems
24. Assisting in pediatrics: the developmental stages and care
25. The medical assistant’s role in caring for the older patient
26. The role of the medical assistant in physical therapy examination and assessment
27. Preparing for minor surgery: room, solutions, and supplies
28. Introduction to the clinical laboratory
29. Urinalysis
29.1 Urine formation and specimen collection
29.2 Physical examination of urine
29.3 Chemical examination of urine
29.4 Additional CLIA-waived urine tests
29.5 Microscopic preparation of urine and cellular findings
29.6 Urine toxicology, legal issues, and professional practice
30. Blood collection
31. Analysis of blood
32. Electrocardiography and heart structure
33. The principles of pharmacology
34. Essential calculations and measurement systems
35. Solid, liquid, & solutions medication doses
36. Administering medications
37. Metabolism and core nutrient roles
38. Medical emergencies in the healthcare setting
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29.5 Microscopic preparation of urine and cellular findings
Achievable CCMA
29. Urinalysis
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Microscopic preparation of urine and cellular findings

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Microscopic examination of urine consists of categorizing and counting cells, casts, crystals, and miscellaneous constituents in the sediment of a urine sample. The sediment is obtained after a measured portion of urine is centrifuged. The sediment will be pushed to the bottom of the tube containing urine. The sediment will be prepared for a microscopic exam, and the remaining liquid urine will be poured off and disposed of properly.

Many formed elements are found in the urine. Some are significant, and others are not. Most important, the microscopic examination should correlate with the physical and chemical analyses. For example, if the physical examination of the urine showed a reddish color and the chemical reagent strip tested positive for blood, then seeing red blood cells during the microscopic examination would be consistent with the physical and chemical results. Medical assistants should be familiar with the preparation of urine specimens for this test and with the possible test results.

Microscopic preparation of urine

To perform the microscopic UA procedure, a laboratory must be certified to perform CLIA Provider-Performed Microscopy Procedures (PPMPs), a subcategory of CLIA moderate-complexity laboratories. Quality assurance is just as important in the microscopic examination as in the chemical analysis of urine. To ensure consistency and standardization, commercially available systems can be used, such as the KOVA System or the UriSystem. These systems may include specially designed, graduated centrifuge tubes with devices or pipettes that allow easy decanting of supernatant and retention of an exact amount of sediment. They also use specially designed plastic slides with wells or coverslips that accept only a given volume of sediment. Control solutions containing preserved cells are also available from KOVA. This type of solution also provides quality control for cell identification. Whatever system is used, the Clinical and Laboratory Standards Institute (CLSI) recommends the following:

  • The urine volume should be 12 mL.
  • The specimen should be centrifuged for 5 minutes at a relative centrifugal force of 400 g (i.e., 400 times normal gravity).
  • A standardized slide should be used to view the sediment.
  • A consistent reporting format should be used.

When a urine sample is centrifuged, the clear upper portion of the specimen is called the supernatant. It is poured off, and a drop of the well-mixed sediment at the bottom of the centrifuged tube is examined under a microscope. The sediment may be stained to give greater contrast to the formed elements. The stain assists in the identification of formed elements by improving the detail of cellular structures.

Microscopic examination of urine

The examination of urine is not categorized as CLIA-waived; therefore it cannot be performed by a medical assistant without additional training, supervision, and rigid compliance with CLIA quality assurance protocols for the laboratory. Periodic proficiency testing must be successfully completed to maintain a PPMP laboratory certification.

The three main categories of microscopic findings are casts, cells, and crystals.

Casts

Casts are created when protein accumulates and precipitates in the kidney tubules and is washed into the urine. The protein takes on the size and shape of the tubules, forming the casts. Casts are cylindric, with flat or rounded ends, and are classified according to the substances observed inside them. Certain types of casts are connected to specific renal diseases and disorders. Other casts are physiologic and are generally caused by strenuous exercise. Casts can dissolve in alkaline urine if the sample is not examined promptly. The microscopic exam should take place as soon as possible after specimen collection. The following paragraphs describe some of the casts that may be seen, but these are not all the possible casts. The presence of casts should be determined using a low-power objective such as the 10x.

Hyaline casts are pale, transparent, cylindric structures with rounded ends and parallel sides. They are formed when urine flow through individual nephrons is diminished. They can be found in the urine of individuals with kidney disease but also in the urine of people without such disease who have exercised heavily. Hyaline casts will be missed entirely if the light is not adjusted properly. Occasionally, hyaline casts have granular or cellular inclusions.

White blood cell casts are hyaline casts that contain leukocytes. White blood cells seen in casts usually have a multilobed nucleus. White blood cell casts are seen in pyelonephritis.

Red blood cell casts always indicate a pathologic condition and are highly diagnostic. These casts occur in glomerulonephritis. They are hyaline casts with embedded red blood cells. Their presence indicates damage to the glomerulus. They may appear brown due to the color of the red blood cells present.

Renal tubular epithelial cell casts contain embedded renal tubular epithelial cells. These casts are easily confused with white blood cell casts, particularly if the cells have started to degenerate. Renal tubular epithelial cell casts are found when excessive damage has occurred in the kidney. Causes include shock, renal ischemia , heavy-metal poisoning, certain allergic reactions, and nephrotoxic drugs.

Finely and coarsely granular casts may indicate renal disease. On close examination, granular casts show a hyaline cast with coarse or fine granular inclusions. The granules are thought to be caused by protein clusters or the breakdown of cellular inclusions.

Waxy casts are rarely seen. They appear as glassy, brittle, smooth, homogeneous structures. They usually are yellowish, have cracks or fissures, and have squared or broken ends. They are considered to be cellular casts that have broken down and are found in individuals with severe renal disease.

Occasionally more than one type of cell is found in a single cast. Mixed cellular casts have been reported, and it may be difficult to absolutely identify the cell types present. Cast identification is not a CLIA-waived procedure.

Cells

Cells found in the urine include epithelial cells, which come from the lining of the genitourinary tract. Red blood cells and white blood cells, which come from the bloodstream, also may be seen. Cells are classified and counted under high-power magnification.

Red blood cells may enter the urinary tract at any point of inflammation or injury. They may be found in normal urine in small numbers. Persistent hematuria should be investigated. Red blood cells are smaller than white blood cells and have no nucleus. If they are in hypotonic (dilute) urine, they swell and burst. In hypertonic (concentrated) urine, they may be bumpy or wrinkle. Another term for this shape is crenated.

Yeast cells in the urine may indicate vaginal contamination or a urinary yeast infection. Yeast is common in the urine of patients with diabetes. Yeast cells are oval shaped and may show budding. Adding a drop of potassium hydroxide (KOH) will assist in distinguishing red blood cells from yeast, as it will cause all red blood cells to lyse but not yeast.

White blood cells may occasionally be found in normal urine, but increased numbers are associated with a UTI or vaginal contamination during specimen collection. White blood cells are larger than red blood cells and have a granular appearance. They may have a multilobed nucleus. Most white blood cells in the urine are neutrophils, but further testing will be needed to actually determine cell type.

Squamous epithelial cells line the lower portion of the genitourinary tract. When present in large numbers in female patients, they usually indicate vaginal contamination. Squamous epithelial cells are large, flat, and irregular. They have a single, small, round, centrally located nucleus and often occur in sheets or clumps.

Transitional epithelial cells line most of the urinary tract. They are round or oval and may have a tail. Occasionally, two nuclei are seen. They may be seen in diseases of the urinary system.

Renal tubular epithelial cells are somewhat larger than white blood cells, are round or oval, and have a nucleus that is single, large, oval, and sometimes eccentric. A few may be found in normal urine specimens, but their presence in increased numbers indicates tubular damage of the nephrons.

Microscopic Preparation and Examination of Urine Sediment

  • Categorizes/counts cells, casts, crystals, and other elements in urine sediment
  • Sediment obtained by centrifuging urine; supernatant poured off, sediment examined microscopically
  • Findings should correlate with physical and chemical urine analysis

Microscopic Preparation of Urine

  • Requires CLIA PPMP certification and quality assurance protocols
  • Standard procedure:
    • 12 mL urine volume
    • Centrifuge 5 min at 400 g
    • Use standardized slides and reporting format
  • Sediment may be stained for better visualization of formed elements

Microscopic Examination of Urine

  • Not CLIA-waived; requires special training and proficiency testing
  • Three main categories: casts, cells, crystals

Casts

  • Cylindrical structures formed from protein in kidney tubules
  • Types and significance:
    • Hyaline casts: transparent, seen in kidney disease or after exercise
    • WBC casts: indicate pyelonephritis
    • RBC casts: diagnostic for glomerulonephritis, always pathologic
    • Renal tubular epithelial cell casts: indicate tubular damage
    • Granular casts: may indicate renal disease
    • Waxy casts: rare, seen in severe renal disease
    • Mixed cellular casts: contain more than one cell type

Cells

  • Epithelial cells: from genitourinary tract lining
    • Squamous: large, flat, indicate vaginal contamination
    • Transitional: round/oval, may have tail, seen in urinary tract disease
    • Renal tubular: larger, single large nucleus, indicate nephron damage
  • RBCs: smaller, no nucleus, indicate bleeding or injury, shape varies with urine concentration
  • WBCs: larger, granular, multilobed nucleus, increased in UTI or contamination
  • Yeast: oval, may bud, common in diabetes or infection; KOH distinguishes from RBCs

Crystals

  • Common, especially if urine cools; most not clinically significant unless numerous
  • Abnormal crystals usually in acidic urine; may indicate disease, metabolic condition, or medication
  • Amorphous urates: acidic urine; amorphous phosphates: alkaline urine
  • Reported as occasional, few, moderate, or many per high-power field

Miscellaneous Findings

  • Oval fat bodies: renal tubular cells/macrophages with absorbed fat, indicate kidney distress
  • Bacteria: few normal; many with WBCs suggest UTI; many without WBCs may indicate specimen sat too long
  • Spermatozoa: may indicate contamination, motile in fresh urine
  • Trichomonas vaginalis: motile protozoan, vaginal contaminant, pear-shaped with flagella
  • Mucous threads: pale, threadlike, seen in inflammation or contamination
  • Artifacts/contaminants: fibers (clothing, diaper, plant), hair, air bubbles—require training to distinguish

Understanding the Results of a Microscopic Examination

  • Casts: counted under low power, reported as numeric ranges per low-power field
  • Cells (RBCs, WBCs, epithelial), yeasts, bacteria, crystals: counted under high power, reported as numeric ranges or descriptive terms (occasional, few, moderate, many)
  • Consistency in counting/reporting methods is essential within a laboratory

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Microscopic preparation of urine and cellular findings

Microscopic examination of urine consists of categorizing and counting cells, casts, crystals, and miscellaneous constituents in the sediment of a urine sample. The sediment is obtained after a measured portion of urine is centrifuged. The sediment will be pushed to the bottom of the tube containing urine. The sediment will be prepared for a microscopic exam, and the remaining liquid urine will be poured off and disposed of properly.

Many formed elements are found in the urine. Some are significant, and others are not. Most important, the microscopic examination should correlate with the physical and chemical analyses. For example, if the physical examination of the urine showed a reddish color and the chemical reagent strip tested positive for blood, then seeing red blood cells during the microscopic examination would be consistent with the physical and chemical results. Medical assistants should be familiar with the preparation of urine specimens for this test and with the possible test results.

Microscopic preparation of urine

To perform the microscopic UA procedure, a laboratory must be certified to perform CLIA Provider-Performed Microscopy Procedures (PPMPs), a subcategory of CLIA moderate-complexity laboratories. Quality assurance is just as important in the microscopic examination as in the chemical analysis of urine. To ensure consistency and standardization, commercially available systems can be used, such as the KOVA System or the UriSystem. These systems may include specially designed, graduated centrifuge tubes with devices or pipettes that allow easy decanting of supernatant and retention of an exact amount of sediment. They also use specially designed plastic slides with wells or coverslips that accept only a given volume of sediment. Control solutions containing preserved cells are also available from KOVA. This type of solution also provides quality control for cell identification. Whatever system is used, the Clinical and Laboratory Standards Institute (CLSI) recommends the following:

  • The urine volume should be 12 mL.
  • The specimen should be centrifuged for 5 minutes at a relative centrifugal force of 400 g (i.e., 400 times normal gravity).
  • A standardized slide should be used to view the sediment.
  • A consistent reporting format should be used.

When a urine sample is centrifuged, the clear upper portion of the specimen is called the supernatant. It is poured off, and a drop of the well-mixed sediment at the bottom of the centrifuged tube is examined under a microscope. The sediment may be stained to give greater contrast to the formed elements. The stain assists in the identification of formed elements by improving the detail of cellular structures.

Microscopic examination of urine

The examination of urine is not categorized as CLIA-waived; therefore it cannot be performed by a medical assistant without additional training, supervision, and rigid compliance with CLIA quality assurance protocols for the laboratory. Periodic proficiency testing must be successfully completed to maintain a PPMP laboratory certification.

The three main categories of microscopic findings are casts, cells, and crystals.

Casts

Casts are created when protein accumulates and precipitates in the kidney tubules and is washed into the urine. The protein takes on the size and shape of the tubules, forming the casts. Casts are cylindric, with flat or rounded ends, and are classified according to the substances observed inside them. Certain types of casts are connected to specific renal diseases and disorders. Other casts are physiologic and are generally caused by strenuous exercise. Casts can dissolve in alkaline urine if the sample is not examined promptly. The microscopic exam should take place as soon as possible after specimen collection. The following paragraphs describe some of the casts that may be seen, but these are not all the possible casts. The presence of casts should be determined using a low-power objective such as the 10x.

Hyaline casts are pale, transparent, cylindric structures with rounded ends and parallel sides. They are formed when urine flow through individual nephrons is diminished. They can be found in the urine of individuals with kidney disease but also in the urine of people without such disease who have exercised heavily. Hyaline casts will be missed entirely if the light is not adjusted properly. Occasionally, hyaline casts have granular or cellular inclusions.

White blood cell casts are hyaline casts that contain leukocytes. White blood cells seen in casts usually have a multilobed nucleus. White blood cell casts are seen in pyelonephritis.

Red blood cell casts always indicate a pathologic condition and are highly diagnostic. These casts occur in glomerulonephritis. They are hyaline casts with embedded red blood cells. Their presence indicates damage to the glomerulus. They may appear brown due to the color of the red blood cells present.

Renal tubular epithelial cell casts contain embedded renal tubular epithelial cells. These casts are easily confused with white blood cell casts, particularly if the cells have started to degenerate. Renal tubular epithelial cell casts are found when excessive damage has occurred in the kidney. Causes include shock, renal ischemia , heavy-metal poisoning, certain allergic reactions, and nephrotoxic drugs.

Finely and coarsely granular casts may indicate renal disease. On close examination, granular casts show a hyaline cast with coarse or fine granular inclusions. The granules are thought to be caused by protein clusters or the breakdown of cellular inclusions.

Waxy casts are rarely seen. They appear as glassy, brittle, smooth, homogeneous structures. They usually are yellowish, have cracks or fissures, and have squared or broken ends. They are considered to be cellular casts that have broken down and are found in individuals with severe renal disease.

Occasionally more than one type of cell is found in a single cast. Mixed cellular casts have been reported, and it may be difficult to absolutely identify the cell types present. Cast identification is not a CLIA-waived procedure.

Cells

Cells found in the urine include epithelial cells, which come from the lining of the genitourinary tract. Red blood cells and white blood cells, which come from the bloodstream, also may be seen. Cells are classified and counted under high-power magnification.

Red blood cells may enter the urinary tract at any point of inflammation or injury. They may be found in normal urine in small numbers. Persistent hematuria should be investigated. Red blood cells are smaller than white blood cells and have no nucleus. If they are in hypotonic (dilute) urine, they swell and burst. In hypertonic (concentrated) urine, they may be bumpy or wrinkle. Another term for this shape is crenated.

Yeast cells in the urine may indicate vaginal contamination or a urinary yeast infection. Yeast is common in the urine of patients with diabetes. Yeast cells are oval shaped and may show budding. Adding a drop of potassium hydroxide (KOH) will assist in distinguishing red blood cells from yeast, as it will cause all red blood cells to lyse but not yeast.

White blood cells may occasionally be found in normal urine, but increased numbers are associated with a UTI or vaginal contamination during specimen collection. White blood cells are larger than red blood cells and have a granular appearance. They may have a multilobed nucleus. Most white blood cells in the urine are neutrophils, but further testing will be needed to actually determine cell type.

Squamous epithelial cells line the lower portion of the genitourinary tract. When present in large numbers in female patients, they usually indicate vaginal contamination. Squamous epithelial cells are large, flat, and irregular. They have a single, small, round, centrally located nucleus and often occur in sheets or clumps.

Transitional epithelial cells line most of the urinary tract. They are round or oval and may have a tail. Occasionally, two nuclei are seen. They may be seen in diseases of the urinary system.

Renal tubular epithelial cells are somewhat larger than white blood cells, are round or oval, and have a nucleus that is single, large, oval, and sometimes eccentric. A few may be found in normal urine specimens, but their presence in increased numbers indicates tubular damage of the nephrons.

Key points

Microscopic Preparation and Examination of Urine Sediment

  • Categorizes/counts cells, casts, crystals, and other elements in urine sediment
  • Sediment obtained by centrifuging urine; supernatant poured off, sediment examined microscopically
  • Findings should correlate with physical and chemical urine analysis

Microscopic Preparation of Urine

  • Requires CLIA PPMP certification and quality assurance protocols
  • Standard procedure:
    • 12 mL urine volume
    • Centrifuge 5 min at 400 g
    • Use standardized slides and reporting format
  • Sediment may be stained for better visualization of formed elements

Microscopic Examination of Urine

  • Not CLIA-waived; requires special training and proficiency testing
  • Three main categories: casts, cells, crystals

Casts

  • Cylindrical structures formed from protein in kidney tubules
  • Types and significance:
    • Hyaline casts: transparent, seen in kidney disease or after exercise
    • WBC casts: indicate pyelonephritis
    • RBC casts: diagnostic for glomerulonephritis, always pathologic
    • Renal tubular epithelial cell casts: indicate tubular damage
    • Granular casts: may indicate renal disease
    • Waxy casts: rare, seen in severe renal disease
    • Mixed cellular casts: contain more than one cell type

Cells

  • Epithelial cells: from genitourinary tract lining
    • Squamous: large, flat, indicate vaginal contamination
    • Transitional: round/oval, may have tail, seen in urinary tract disease
    • Renal tubular: larger, single large nucleus, indicate nephron damage
  • RBCs: smaller, no nucleus, indicate bleeding or injury, shape varies with urine concentration
  • WBCs: larger, granular, multilobed nucleus, increased in UTI or contamination
  • Yeast: oval, may bud, common in diabetes or infection; KOH distinguishes from RBCs

Crystals

  • Common, especially if urine cools; most not clinically significant unless numerous
  • Abnormal crystals usually in acidic urine; may indicate disease, metabolic condition, or medication
  • Amorphous urates: acidic urine; amorphous phosphates: alkaline urine
  • Reported as occasional, few, moderate, or many per high-power field

Miscellaneous Findings

  • Oval fat bodies: renal tubular cells/macrophages with absorbed fat, indicate kidney distress
  • Bacteria: few normal; many with WBCs suggest UTI; many without WBCs may indicate specimen sat too long
  • Spermatozoa: may indicate contamination, motile in fresh urine
  • Trichomonas vaginalis: motile protozoan, vaginal contaminant, pear-shaped with flagella
  • Mucous threads: pale, threadlike, seen in inflammation or contamination
  • Artifacts/contaminants: fibers (clothing, diaper, plant), hair, air bubbles—require training to distinguish

Understanding the Results of a Microscopic Examination

  • Casts: counted under low power, reported as numeric ranges per low-power field
  • Cells (RBCs, WBCs, epithelial), yeasts, bacteria, crystals: counted under high power, reported as numeric ranges or descriptive terms (occasional, few, moderate, many)
  • Consistency in counting/reporting methods is essential within a laboratory

More from Urinalysis

  • Urine formation and specimen collection
  • Physical examination of urine
  • Chemical examination of urine
  • Additional CLIA-waived urine tests
  • Urine toxicology, legal issues, and professional practice